Anthropological Genomics Lab | The Voyage - Software and Publications

2003

Halder, I. and Shriver, M.D. (2003) Measuring and using admixture to study the genetics of complese diseases. Human Genomics 1:52-62.
Hoggart, C.J., Parra, E.J., Shriver, M.D., Bonilla, C., Kittles, R.A., Clayton, D.G., McKeigue, P.M. (2003) Control of Confounding of Genetic Associations in Stratified Populations. Am. J. Hum. Genet 72:1492-1504
Gower, B.A., Frnandez, J.R., Beasley, T.M., Shriver, M.D.,Goran, M.I. (2003) Using Genetic Admixture to Explain Racial Differences in Insulin-Related Phenotypes. Diabetes 52:1047-1051
Shriver, M.D., Parra, E.J., Dios, S., Bonilla, C., Norton, H., Jovel, C., Pfaff, C., Jones, C., Massac, A., Cameron, N., Baron, A., Jackson, T., Argyropoulos, G., Jin, L. Hoggart, C.J., McKeigue, P.M., Kittles, R.(2003) Skin pigmentation, biogeographical ancestry and admixture mapping. Human Genetics 112:387-399
Fernamdez, J.R., Shriver, M.D., Beasley, T. M., Rafla-Demetrious, N., Parra, E., Albu, J., Nicklas, B., Ryan, A.S., McKeigue, P.M., Hoggart, C.L.,Weinsier, R.L., Allison, D.B. (2003) Association of African Genetic Admixture with Resting Metabolic Rate and Obesity Among Women.Obesty Research 11(7):
Shriver, M., Akey, J.M. (2003) Method of Analyzing Single Nucleotide Polymorphisms Using Melting Curve and Restriction Endonuclease Digestion. United States Patent US,6506568B2
Molokhia, M., Hoggart, C., Patrick, A.L., Shriver, M., Parra, E., Ye, J., Silman, A.J., Mckeigue, P. M. (2003) Relation of risk of systemic lupus erythematosus to west African admixture in a Caribbean population. Hum Genetics 112: 1-9

2002

Akey, J.M., Zhang, G., Zhang, K., Jin, L., Shriver, M.D. (2002) Interrogating a high-density SNP map for signatures of natural selection. Genome Research 12:1805-1814.
Ye, Jian.,Parra, E.J., Sosnoski, D. N., Heister, K., Underhill, P. A., Shriver, M.D. (2002) Melting Curve SNP (McSNP) Genotyping: a Useful Approach for Diallelic Genotyping in Forensic Science. J Forensic Sci 47(3):593-600.
Wagner, J.K., Jovel, C., Norton, H., Parra, E. J., Shriver, M.D. (2002) Comparing Quantitative Measures of Erythema, Pigmentation and Skin Response using Reflectometry. Pigment Cell Research 15:379-384.
Wagner, J.k., Parra, E. J., Norton, H. L., Jovel, C., Shriver, M.D. (2002) Skin Responses to Ultraviolet Radiation: Effects of Constitutive Pigmentation, Sex, and Ancestry. Pigment Cell Research 15:385-390.
Pfaff, C.L., Shriver, M. D., Kittles, R.A. (2002) Adjusting for Population Structure in Admixed Populations. Genetic Epidemiology 22:196-201.

2001

Pfaff, C.L., Parra, E.J., Bonilla, C., Hiester, K., McKeigue, P.M., Kamboh, M. I., Hutchinson R.G., Ferrell, R.E., Boerwinkle, E., and shriver, M.D. (2001) Population Structure in Admixed Populations: Effect of Admixture Dynamics on the Pattern of Linkage Disequilibrium. Am J. Hum. Genet 68:198-207.
Parra, E.J., Kittles, R.A., Argyropoulos, G., Pfaff, C.L., Hiester, K., Bonilla, C., Sylvester, N., Parrish-Gause, D., Garvey, W.T., Jin, L., McKeigue, P.M., Kamboh, M.I., Ferrell, R.E., Pollitzer, W.S., and Shriver, M.D. (2001) Ancestral Proportions and Admixture Dynamics in Geographically Defined African Americans Living in South Carolina. Am. J. Phys. Anthro. 114: 18-29.
Mayfield, D.K., Brown, A.M., Page, G.P., Garvey, W.T., Shriver, M.D., Argyropoulos, G. (2001) A Role for the Agouti-Related Protein Promoter in Obesity and Type 2 Diabetes. Biochem Biophys. Res. Commun. 287:568-73.
Akey, J.M., Sosnoski, D., Parra, E., Dios, S., Hiester, K., Su, B., Bonilla, C., Jin, L., Shriver, M.D. (2001) Melting curve analysis of SNPs (McSNP): A simple gel-free low-cost approach to SNP genotyping and DNA fragment analysis. BioTechniques 30: 358-367.
Akey, J.M., Wang, H., Xiong, M., Wu, H., Liu, W., Shriver, M.D., Jin, L. (2001) Interaction between the melanocortin-1 receptor and P genes contributes to inter-individual variation in skin pigmentation phenotypes in a Tibetan population. Human Genetics 108:516-520.

2000

Su, B., Jin, L., Underhill, P., Martinson, J., Saha, N., McGarvey, S.T., Shriver, M.D., Chu, J., Oefner, P., Chakraborty, R., Deka, R. (2000) Polynesian origins: Insights from the Y chromosome. Proc. Natl. Acad. Sci. USA. 97:8225-8228.
Shriver, M.D. and Parra, E.J. (2000) Comparison of Narrow-Band Reflectance Spectroscopy and Tristimulus Colorimetry for Measurements of Skin and Hair Color in Persons of Different Biological Ancestry. Am. J. Phys. Anthro. 112:17-27.
Shriver, M.d. Smith, M. W., and Jin, L. (200) Phosphomannose Isomerase Deficiency: A Carbohydrate-Deficient Glycoprotein syndrome with Hepatic-Intestinal Presentation. Am. J. Hum. Genet. 62:1535-1539:
McKeigue, P.M., Carpenter, J., Parra, E.J., Shriver, M.D. (2000) Estimation of admixture and detection of linkage in admixed populations by a Bayesian approach: application to African-American populations. Ann. Hum. Genet. 64:171-186.

1999

Parra E.J., Shriver, M.D., Soemantri, A., McGarvey, S.T., Hundrieser, J., Saha, N., Deka, R. (1999) Genetic variation at nine autosomal microsatellite loci in Asian and Pacific populations. Hum. Biology 71:757-779.
Parra E. Shriver, M.D., Soemantri A, McGarvey ST, Hundrieser J, Saha N, Deka R. (1999) Analysis of five Y-specific microsatellite loci in Asian and Pacific populations. Am. J. Phys. Anthro. 110:1-16.

1998

Parra, E., Marcini, A., Akey, J., Martinson, J., Batzer, M. A., Cooper, R., Forrester, T., Allison, D.B., Deka, R., Ferrell, R.E., Shriver, M.D. (1998) Estimating African-American Admixture Proportions by Use of Population-Specific Alleles. Am. J. Hum. Genet. 63:1839-1851.
Shriver, S.P., Shriver, M.D., Tirpak, D.L., Bloch, L.M., Hunt, J.D., Ferrell, R.E., and Siegfried, J.M. (1998) Trinucleotide repeat length variation in the human ribosomal protein L14 gene (RPL14): Localization to 3p21.3 and loss of heterozygosity in lung and oral cancers. Mutation Res. 406:9-23.
Bennett, L. B., Shriver, M.D., Bowcock, A. M.(1998) Markers and Methods for Reconstructing Modern Human History. DNA Sequence 8(5):329-341.

1997

MacHugh, D.E., Shriver, M.D., Loftus, R.T., Cunningham, P., and Bradley, D.G. (1997) Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus). Genetics 146: 1071-1086.
Shriver, M.D., Jin, L., Ferrell, R.E., Deka, R. (1997) Microsatellite Data Support an Early Population Expansion in Africa. Genome Research 7: 586-591.
Shriver, M.D., Smith, M.W., Jin, L., Marcini, A., Akey, J.M., Deka, R., Ferrell, R.E. Ethnic affiliation estimation using population-specific DNA markers. (1997b) Am. J. Hum. Genet. 60: 957-964.
Ishwad, C.S., Shriver, M.D., Lassige, D.M., and Ferrell, R.E. (1997) The high mobility group I-C gene (HMGI-C): polymorphism and genetic localization. Hum. Genet. 99: 103-105.

1996

Chakraborty, R., Stivers, D.N., Deka, R., Yu, L.M., Shriver, M.D., Ferrell, R.E. (1996) Segregation distortion of the CTG repeats at the myotonic dystrophy locus. Am. J. Hum. Genet. 59: 109-118.
Deka, R., Jin, L., Shriver, M.D., Yu, L.-M., Saha, N., Barrantes, R., Chakraborty, R., and Ferrell, R.E. (1996) Dispersion of human Y chromosome haplotypes based on five microsatellites in global populations. Genome Res. 6: 1177-1184.
Deka, R. , Majumder, P. P., Shriver, M. D., Stivers, D. N., Zhong, Y., Yu, L. M., Barrantes, R., Yin, S. J., Tetsuro, M., Hundrieser, J., Bunker, C., McGarvey, S. T., Sakallah, S., Ferrell, R. E., Chakraborty, R. (1996) Distribution and Evolution of CTG Repeats at The Myotonin Protein Kinase Gene in Human Populations. Genone Research 6:142-154:

1995

Shriver, M.D., Jin, L., Boerwinkle, E., Deka, R., Ferrell, R.E., and Chakraborty, R. (1995) A novel measure of genetic distance for highly polymorphic tandem repeat loci. Mol. Biol. Evol. 15: 914-920.
Deka, R., Jin, L., Shriver, M.D., Yu, L.-M., De Croo, S., Hundrieser, J., Bunker, C.H., Ferrell, R.E., and Chakraborty, R. (1995a) Population genetics of dinucleotide (CA)n polymorphisms in world populations. Am. J. Hum. Genet. 56: 461-474.
Deka, R. , Miki, T., Yin, S.J., McGarvey, S.T., Shriver, M.D., Bunker, C.H., Raskin, S., Hundrieser, J., Ferrell, R.E., and Chakraborty, R. (1995) Normal CAG variation at the DRPLA Locus in World Populations. Am. J. Hum. Genet. 57: 508-511.
Deka, R., Shriver, M.D., Yu, L.M., Ferrell, R.E., Chakraborty, R. (1995) Intra- and inter-population diversity at short tandem repeat loci in diverse populations of the world. Electrophoresis 16: 1659-1664.
Ellsworth, D.L. , Shriver, M.D., Boerwinkler, E. (1995) Nucleotide sequence analysis of the apolipoprotein B 3' VNTR. Hum. Mol. Genet. 4(5): 937-944.

1994

Deka, R., Shriver, M.D., Yu, L.-M., Jin, L., Aston, C.E., Chakraborty, R., and Ferrell, R.E. (1994) Conservation of human chromosome 13 polymorpic microsatellites. Genomics 22: 226-230.

1993

Shriver, M.D. Jin, L., Chakraborty, R., Boerwinkle, E. (1993) VNTR Allele Frequency Distributions Under the Stepwise Mutation Model: A Computer Simulation Approach. Genetics 134: 983-993.

1992

Shriver, M.D. Siest, G., and Boerwinkle, E. (1992) Length and Sequence Variation in the Apolipoprotein B Intron 20 Alu Repeat. Genomics 14: 449-454.

1991

Shriver, M.D. Boerwinkle, E., Hewett-Emmett, D., and Hanis, C. (1991) Frequency and Effects of Apolipoprotein E Polymorphism in Mexican-American NIDDM Subjects. Diabetes 40(3): 334-337.